Resources for reproducibility chapter

Checklist / Exercise

• [ ] Define reproducibility for yourself.

What to learn next?

Open Research would be a good chapter to read next. If you want to start learning hands-on practices, we recommend reading the Version Control chapter next.

Bibliography

• Baker, M. (2016). 1,500 scientists lift the lid on reproducibility. Nature, 533(7604), 452–454. https://doi.org/10.1038/533452a

• Barba, L. (2018). Terminologies for Reproducible Research, arXiv preprint: https://arxiv.org/abs/1802.03311

• Claerbout, J. F., & Karrenbach, M. (1992). Electronic documents give reproducible research a new meaning. In SEG Technical Program Expanded Abstracts 1992. Society of Exploration Geophysicists. https://doi.org/10.1190/1.1822162

• Dirnagl, U., & Lauritzen, M. (2010). Fighting Publication Bias: Introducing the Negative Results Section. Journal of Cerebral Blood Flow & Metabolism, 30(7), 1263–1264. https://doi.org/10.1038/jcbfm.2010.51

• Heroux, M. A., Barba, L., Parashar, M., Stodden, V., & Taufer, M. (2018). Toward a Compatible Reproducibility Taxonomy for Computational and Computing Sciences. Office of Scientific and Technical Information (OSTI). https://doi.org/10.2172/1481626

• Markowetz, F. (2015). Five selfish reasons to work reproducibly. Genome Biology, 16(1). https://doi.org/10.1186/s13059-015-0850-7

• Piwowar, H. A., Day, R. S., & Fridsma, D. B. (2007). Sharing Detailed Research Data Is Associated with Increased Citation Rate. PLoS ONE, 2(3), e308. https://doi.org/10.1371/journal.pone.0000308

• Piwowar, H. A., & Vision, T. J. (2013). Data reuse and the open data citation advantage. PeerJ, 1, e175. https://doi.org/10.7717/peerj.175

• Whitaker, Kirstie (2018): Barriers to reproducible research (and how to overcome them). figshare. Paper. https://doi.org/10.6084/m9.figshare.7140050.v2

Additional material

Videos

• Markowetz, F. (2016). 5 selfish reasons to work reproducibly. Talk at scidata 2016. https://www.youtube.com/watch?v=Is15CMVPHas&feature=youtu.be

Recommended reading

• Barba, L. (2017): Barba-group Reproducibility Syllabus. figshare. Paper. https://doi.org/10.6084/m9.figshare.4879928.v1

Other useful links

• Markowetz, F. (2018). 5 selfish reasons to work reproducibly. Slides available at https://osf.io/a8wq4/